BROWSE A-Z
All 305,250 crates, alphabetically
Data as of 2026-07-25 (crates.io database dump, timestamp 2026-07-25T02:00:36Z). Source: crates.io · db-dump.tar.gz · methodology & corrections.
rsomics-rclrRobust centered log-ratio (rCLR) transform of a sparse composition table — zeros become NaN instead of needing a pseudocount —…40MIT OR Apache-2.0
rsomics-rdaRedundancy Analysis (RDA) of a response table against constraints — scikit-bio skbio.stats.ordination.rda equivalent (linear…33MIT OR Apache-2.0
rsomics-reachablePer-source reachability in a directed graph (ancestors + descendants) — value-exact networkx equivalent36MIT OR Apache-2.0
rsomics-reaching-centralityGlobal + local reaching centrality (Mones-Vicsek-Vicsek 2012) — value-exact networkx equivalent36MIT OR Apache-2.0
rsomics-read-distributionDistribution of RNA-seq reads over genomic features (CDS/UTR/intron/TSS/TES) — Rust port of RSeQC read_distribution.py19MIT OR Apache-2.0
rsomics-read-duplicationSequence-based and position-based read duplication rate — Rust port of RSeQC read_duplication.py18MIT OR Apache-2.0
rsomics-read-gcPer-read GC% distribution from a BAM — Rust port of RSeQC read_GC.py17MIT OR Apache-2.0
rsomics-read-hexamerHexamer (6-mer) frequency table from FASTA/FASTQ reads — Rust port of RSeQC read_hexamer.py19MIT OR Apache-2.0
rsomics-read-nvcPer-cycle nucleotide composition (NVC) from a BAM — Rust port of RSeQC read_NVC.py18MIT OR Apache-2.0
rsomics-read-qualityPer-base read-quality heatmap and boxplot from BAM — Rust port of RSeQC read_quality.py19MIT OR Apache-2.0
rsomics-regionpropsRegion shape descriptors from 2D label images — closed-form port of skimage.measure.regionprops39MIT OR Apache-2.0
rsomics-regression-metricsRegression metrics — R², MSE/RMSE, MAE, explained variance, max error, median AE, MAPE — value-exact scikit-learn equivalent22MIT OR Apache-2.0
rsomics-relative-riskRelative risk (risk ratio) of a 2×2 cohort table with a Katz log-normal confidence interval — value-exact…20MIT OR Apache-2.0
rsomics-remove-batch-effectRegress out a batch factor from a log-expression gene x sample matrix — a Rust reimplementation of limma's removeBatchEffect…53MIT OR Apache-2.0
rsomics-rereplicateExpand abundance-annotated FASTA back into individual reads — port of vsearch --rereplicate17MIT OR Apache-2.0
rsomics-rich-club-coefficientRich-club coefficient of undirected graphs — value-exact port of networkx.rich_club_coefficient (normalized=False)41MIT OR Apache-2.0
rsomics-rna-fragment-sizePer-transcript mRNA fragment-size distribution for paired RNA-seq — Rust port of RSeQC RNA_fragment_size.py18MIT OR Apache-2.0
rsomics-rnaseq-metricsRNA-seq QC metrics (region coverage fractions, strand bias, transcript-coverage bias) — Rust port of Picard CollectRnaSeqMetrics17MIT OR Apache-2.0
rsomics-robust-regressionTheil-Sen and Siegel median-based robust linear regression — value-exact scipy.stats.theilslopes / siegelslopes equivalent22MIT OR Apache-2.0
rsomics-roc-aucROC AUC, average precision, and the ROC / precision-recall curve points for binary classification — value-exact scikit-learn…33MIT OR Apache-2.0
rsomics-rpkm-saturationSubsample-based RPKM saturation analysis — Rust reimplementation of RSeQC RPKM_saturation.py18MIT OR Apache-2.0
rsomics-runstestWald-Wolfowitz runs test — statsmodels runstest_1samp/runstest_2samp equivalent, value-exact40MIT OR Apache-2.0
rsomics-s-metricCompute the s-metric of an undirected graph (Σ deg(u)·deg(v) over edges)62MIT OR Apache-2.0
rsomics-sam-to-bamConvert SAM to BAM — Rust equivalent of samtools view -bS39MIT OR Apache-2.0
rsomics-sample-sheetParse, validate, and convert sample sheets (Illumina/custom TSV) — check FASTQ paths, detect paired-end, generate configs34MIT OR Apache-2.0
rsomics-sc-cell-cyclePer-cell cell-cycle phase scoring (S_score, G2M_score, phase) from a single-cell matrix — matches scanpy…32MIT OR Apache-2.0
rsomics-sc-combatComBat empirical-Bayes batch-effect correction of a single-cell matrix — matches scanpy pp.combat (parametric EB, ddof…35MIT OR Apache-2.0
rsomics-sc-dendrogramHierarchical clustering of single-cell groupby categories — scanpy sc.tl.dendrogram port (group-mean aggregation, correlation…54MIT OR Apache-2.0
rsomics-sc-diffmapDiffusion map embedding from a kNN neighbors graph — scanpy sc.tl.diffmap equivalent: X_diffmap eigenvectors + diffmap_evals of…55MIT OR Apache-2.0
rsomics-sc-downsampleDownsample a single-cell count matrix per cell without replacement — matches scanpy pp.downsample_counts (numba legacy MT19937…16MIT OR Apache-2.0
rsomics-sc-dptDiffusion pseudotime from a diffusion map and a root cell — scanpy sc.tl.dpt equivalent: dpt_pseudotime, the…41MIT OR Apache-2.0
rsomics-sc-embedding-densityPer-group Gaussian-KDE cell density on a 2D embedding, min-max normalized to [0,1] — scanpy tl.embedding_density equivalent,…49MIT OR Apache-2.0
rsomics-sc-filterFilter cells and genes of a 10x single-cell count matrix by count/expression thresholds (scanpy filter_cells + filter_genes…18MIT OR Apache-2.0
rsomics-sc-filter-rank-genesPost-filter a rank_genes_groups marker table by in/out-group expressed fraction and fold change — scanpy filter_rank_genes_groups…57MIT OR Apache-2.0
rsomics-sc-hvgHighly-variable-gene selection from a single-cell count matrix — scanpy seurat-flavor compatible52MIT OR Apache-2.0
rsomics-sc-hvg-cellrangerHighly-variable-gene selection (cell_ranger flavor) from a 10x matrix — scanpy highly_variable_genes-compatible53MIT OR Apache-2.0
rsomics-sc-marker-overlapOverlap stats (count/coef/jaccard) between data-derived marker genes and reference marker sets — scanpy marker_gene_overlap…60MIT OR Apache-2.0
rsomics-sc-normalizeLibrary-size normalization + log1p of a single-cell count matrix — matches scanpy normalize_total/log1p33MIT OR Apache-2.0
rsomics-sc-pagaPAGA partition-based graph abstraction connectivity — scanpy sc.tl.paga (v1.2 / v1.0) cluster-connectivity matrix +…58MIT OR Apache-2.0
rsomics-sc-pcaZero-centered truncated PCA of a single-cell matrix — scanpy sc.pp.pca (arpack) equivalent: X_pca scores, PCs loadings, variance,…53MIT OR Apache-2.0
rsomics-sc-pearson-residualsAnalytic Pearson residuals normalization of a single-cell count matrix — value-exact match of…44MIT OR Apache-2.0
rsomics-sc-pseudobulkPseudobulk aggregation of a single-cell count matrix — sum or mean counts per group, matching scanpy sc.get.aggregate38MIT OR Apache-2.0
rsomics-sc-qc-metricsPer-cell and per-gene QC metrics from a 10x single-cell count matrix — Rust port of scanpy calculate_qc_metrics35MIT OR Apache-2.0
rsomics-sc-rank-genesMarker-gene ranking per group (Welch t-test or Wilcoxon rank-sum) from a single-cell count matrix — scanpy rank_genes_groups…53MIT OR Apache-2.0
rsomics-sc-regress-outRegress out unwanted per-cell covariates from a single-cell count matrix via per-gene OLS — matches scanpy pp.regress_out…18MIT OR Apache-2.0
rsomics-sc-scaleZ-score scaling of a single-cell count matrix — matches scanpy pp.scale (zero_center, ddof=1 std, symmetric clip)35MIT OR Apache-2.0
rsomics-sc-score-genesGene-set score per cell (mean of a gene list minus an expression-bin-matched random control set) — matches scanpy…58MIT OR Apache-2.0
rsomics-sc-spatial-autocorrPer-feature spatial/graph autocorrelation (Moran's I / Geary's C) of values over a cell graph — scanpy sc.metrics.morans_i /…36MIT OR Apache-2.0
rsomics-sc-subsampleSubsample cells of a single-cell matrix without replacement — matches scanpy pp.subsample (legacy numpy MT19937 reproduced…20MIT OR Apache-2.0
rsomics-scalersPer-feature preprocessing scalers — RobustScaler, MinMaxScaler, MaxAbsScaler — value-exact scikit-learn equivalent (fit+transform…21MIT OR Apache-2.0
rsomics-seacrCUT&RUN peak caller (bedGraph → BED peaks) — clean-room Rust port of SEACR36MIT OR Apache-2.0
rsomics-seq-distPairwise nucleotide-sequence distances (Hamming, JC69, K2P) from an aligned FASTA — value-exact to scikit-bio, emits a…37MIT OR Apache-2.0
rsomics-seq-grepFilter FASTA/FASTQ records by ID/name/sequence — seqkit grep port30MIT OR Apache-2.0
rsomics-seq-statsQuick stats for any FASTA/FASTQ — count, total bp, N50, GC%, min/max/mean length34MIT OR Apache-2.0
rsomics-seqioFast FASTQ reader for the rsomics-* tool family: decode-only producer thread + parallel parse, ISA-L igzip gz backend on Linux…390MIT OR Apache-2.0
rsomics-seqstatsFormat-agnostic sequence statistics primitives (length distribution: N50/L50/Nx + quartiles, base composition, alphabet guess).…143MIT OR Apache-2.0
rsomics-shapiroShapiro-Wilk test of normality (W statistic + p-value) — value-exact to scipy.stats.shapiro112MIT OR Apache-2.0
rsomics-sigmaclipIterative sigma-clipping of a sample — value-exact to scipy.stats.sigmaclip23MIT OR Apache-2.0
rsomics-silhouetteSilhouette clustering-quality coefficient (silhouette_score + silhouette_samples) — value-exact scikit-learn equivalent37MIT OR Apache-2.0
rsomics-somersdSomers' D asymmetric ordinal association with asymptotic p-value — scipy.stats.somersd equivalent, value-exact19MIT OR Apache-2.0
rsomics-spanning-treeMinimum / maximum spanning tree (forest) of a weighted edge-list graph — networkx minimum_spanning_tree equivalent31MIT OR Apache-2.0
rsomics-spearman-corrSpearman (and Pearson) rank correlation with the Student-t p-value — scipy.stats.spearmanr/pearsonr equivalent, value-exact40MIT OR Apache-2.0
rsomics-square-clusteringSquare clustering coefficient (C4) for undirected graphs — exact port of networkx.square_clustering37MIT OR Apache-2.0
rsomics-square-tableBowker's symmetry test and the Stuart-Maxwell / Bhapkar marginal-homogeneity tests on a k×k paired table — value-exact…40MIT OR Apache-2.0
rsomics-statsStatistical tests, FDR control, p-value combination for the rsomics-* tool family. Layer A primitive.244MIT OR Apache-2.0
rsomics-struc-zeroStructural-zero detection for compositional feature tables: per-feature × per-group boolean grid flagging features systematically…49MIT OR Apache-2.0
rsomics-subsample-countsRarefy a count table: subsample each sample column to a fixed total without replacement, value-exact with scikit-bio…35MIT OR Apache-2.0
rsomics-tabixBuild a coordinate index (.tbi/.csi) for a bgzipped, position-sorted tab-delimited file and query regions — Rust port of htslib…35MIT OR Apache-2.0
rsomics-tajima-dCompute Tajima's D from a site frequency spectrum (derived allele counts)17MIT OR Apache-2.0
rsomics-tax-assignLightweight taxonomic assignment from k-mer LCA — classify reads against a reference taxonomy34MIT OR Apache-2.0
rsomics-taxonomyNCBI taxdump parser + LCA + lineage helpers for the rsomics-* tool family. Layer A primitive.51MIT OR Apache-2.0
rsomics-tinTranscript Integrity Number (TIN) for RNA-seq QC — Rust port of RSeQC tin.py37MIT OR Apache-2.0
rsomics-tm-alignPairwise structural alignment of two protein structures (PDB) — TM-score, RMSD, rotation, and residue alignment, à la TMalign35MIT OR Apache-2.0
rsomics-tm-nnOligo melting temperature (nearest-neighbor Tm_NN + empirical Tm_GC) and molecular weight — value-exact Rust port of Biopython…39MIT OR Apache-2.0
rsomics-tmm-normTMM (trimmed mean of M-values) per-sample normalization factors for a count matrix — Rust port of edgeR…51MIT OR Apache-2.0
rsomics-tpmTPM, FPKM, and upper-quartile (FPKM-UQ) normalization of gene count matrices given gene lengths66MIT OR Apache-2.0
rsomics-transcript-fastaExtract spliced transcript/CDS/protein FASTA from a genome + GFF3/GTF gene model — gffread sequence-extraction port13MIT OR Apache-2.0
rsomics-transitiveDAG transitive reduction and transitive closure on a directed edge list. Value-exact Rust port of NetworkX transitive_reduction /…36MIT OR Apache-2.0
rsomics-transitive-closureGeneral transitive closure (reachability) of any directed graph — including cyclic — from an edge list. Value-exact Rust port of…56MIT OR Apache-2.0
rsomics-tree-balancePhylogenetic tree-shape / balance statistics (Colless, Sackin, B1, treeness, N-bar, Pybus-Harvey gamma) — value-exact DendroPy…20MIT OR Apache-2.0
rsomics-tree-branch-scoreBranch-score (Kuhner-Felsenstein Euclidean) and false-positive/false-negative bipartition distances between two phylogenetic…20MIT OR Apache-2.0
rsomics-tree-rfdRobinson-Foulds (symmetric-difference) topological distance between two phylogenetic trees — scikit-bio compare_rfd equivalent,…37MIT OR Apache-2.0
rsomics-tree-tipdistPatristic tip-to-tip distance matrix from a phylogenetic tree (sum of branch lengths between every pair of tips) — scikit-bio…52MIT OR Apache-2.0
rsomics-tree-wrfdWeighted Robinson-Foulds distance between two phylogenetic trees (branch-length vector distance over matched bipartitions) —…51MIT OR Apache-2.0
rsomics-triadic-censusDirected triad census (Batagelj-Mrvar 16-type) — value-exact port of networkx.triadic_census37MIT OR Apache-2.0
rsomics-trimmed-statsTrimmed sample statistics (tmean, tvar, tstd, tsem, trim_mean) — value-exact to scipy.stats37MIT OR Apache-2.0
rsomics-tsv-crosstabCross-tabulate a delimited file into a contingency table — like GNU datamash crosstab40MIT OR Apache-2.0
rsomics-tsv-filterFilter CSV/TSV rows by an arithmetic condition on selected fields — csvtk filter port49MIT OR Apache-2.0
rsomics-tsv-freqFrequencies of selected CSV/TSV fields — value-exact csvtk freq port41MIT OR Apache-2.0
rsomics-tsv-grepFilter CSV/TSV rows by selected fields with patterns/regexes — csvtk grep port73MIT OR Apache-2.0
rsomics-tsv-joinJoin two TSV files by a shared key column — inner/left/outer join34MIT OR Apache-2.0
rsomics-tsv-jsonConvert CSV/TSV to JSON — value-exact csvtk csv2json port26MIT OR Apache-2.0
rsomics-tsv-mdCSV/TSV to GitHub-flavored Markdown table — value-exact csvtk csv2md port27MIT OR Apache-2.0
rsomics-tsv-prettyCSV/TSV to a readable aligned table — value-exact csvtk pretty port16MIT OR Apache-2.0
rsomics-tsv-rstCSV/TSV to reStructuredText grid table — value-exact csvtk csv2rst port15MIT OR Apache-2.0
rsomics-tsv-selectSelect, reorder, or rename columns from TSV files — cut + awk for bioinformatics pipelines43MIT OR Apache-2.0
rsomics-tsv-sortSort CSV/TSV rows by selected fields (string/number/natural/reverse) — csvtk sort port53MIT OR Apache-2.0
rsomics-tsv-statsPer-column and per-group summary statistics of a delimited file — groupby + aggregations like GNU datamash41MIT OR Apache-2.0
rsomics-tsv-transposeTranspose a delimited file — swap rows and columns, like GNU datamash transpose36MIT OR Apache-2.0
rsomics-tsv-uniqUnique CSV/TSV rows by selected fields without sorting — csvtk uniq port56MIT OR Apache-2.0
rsomics-ttestStudent / Welch t-tests (one-sample, two-sample, paired) — value-exact to scipy.stats ttest_ind/ttest_1samp/ttest_rel, faster…35MIT OR Apache-2.0
rsomics-uniform-filterValue-exact port of scipy.ndimage.uniform_filter (box/mean blur)20MIT OR Apache-2.0
rsomics-unifracPairwise UniFrac phylogenetic beta-diversity (unweighted / weighted / weighted-normalized) from a feature count table + a rooted…51MIT OR Apache-2.0
rsomics-upgmaUPGMA (average-linkage) hierarchical clustering tree from a distance matrix — outputs Newick59MIT OR Apache-2.0
rsomics-uq-normUpper-quartile per-sample normalization factors for a count matrix — Rust port of edgeR calcNormFactors(method="upperquartile")54MIT OR Apache-2.0
rsomics-variationCoefficient of variation (std/mean) of a sample — value-exact to scipy.stats.variation20MIT OR Apache-2.0
rsomics-vcf-af-distGenotype-probability distribution binned by allele frequency under HWE, from a VCF — value-exact with bcftools +af-dist20MIT OR Apache-2.0
rsomics-vcf-allele-lengthVCF allele character-length histogram — reimplements bcftools +allele-length35MIT OR Apache-2.0
rsomics-vcf-annotateAnnotate VCF variants with labels from a BED/TSV file73MIT OR Apache-2.0
rsomics-vcf-callBayesian SNP/indel calling from mpileup likelihoods — Rust port of bcftools call -c38MIT OR Apache-2.0
rsomics-vcf-cnvHMM-based CNV caller from BAF + LRR in a single-sample VCF — Rust port of bcftools cnv37MIT OR Apache-2.0
rsomics-vcf-concatConcatenate VCFs (same samples) — Rust port of bcftools concat77MIT OR Apache-2.0
rsomics-vcf-consensusApply VCF variants to a reference FASTA — Rust port of bcftools consensus56MIT OR Apache-2.0
rsomics-vcf-contrastPer-variant case/control allelic contrast — novel-allele/genotype detection plus Fisher's exact association probability —…37MIT OR Apache-2.0
rsomics-vcf-convertConvert between VCF text, bgzipped VCF, and HAP/LEGEND/SAMPLE — Rust port of bcftools convert60MIT OR Apache-2.0
rsomics-vcf-countCount variants in VCF files18MIT OR Apache-2.0
rsomics-vcf-csqAnnotate VCF variants with functional consequences (missense, frameshift, splice, …) using a GTF/GFF3 gene model50MIT OR Apache-2.0
rsomics-vcf-exprbcftools-style VCF filter-expression parser and per-sample evaluator128MIT OR Apache-2.0
rsomics-vcf-extractExtract VCF INFO fields or FORMAT subfields into a TSV table — reimplements vcftools --get-INFO / --extract-FORMAT-info57MIT OR Apache-2.0
rsomics-vcf-fill-tagsRecompute VCF INFO tags (AN, AC, AF, MAF, NS, AC_Hom, AC_Het, AC_Hemi, HWE, ExcHet) from FORMAT/GT — Rust port of bcftools…77MIT OR Apache-2.0
rsomics-vcf-filterVCF/BCF record filtering by region, quality, INFO/FORMAT fields — Rust port of bcftools view/filter73MIT OR Apache-2.0
rsomics-vcf-filter-summaryVCF per-FILTER variant count and Ts/Tv summary — reimplements vcftools --FILTER-summary75MIT OR Apache-2.0
rsomics-vcf-fixrefCheck/fix VCF REF allele and strand against a reference FASTA — Rust port of bcftools +fixref54MIT OR Apache-2.0
rsomics-vcf-freq-tableAllele frequency and count tables from a VCF (vcftools --freq/--freq2/--counts/--counts2)55MIT OR Apache-2.0
rsomics-vcf-grepFilter VCF variants by ID or INFO regex18MIT OR Apache-2.0
rsomics-vcf-gtcheckSample concordance / discordance estimator — Rust port of bcftools gtcheck72MIT OR Apache-2.0
rsomics-vcf-hardyHardy-Weinberg equilibrium test per site from VCF — byte-identical to vcftools --hardy42MIT OR Apache-2.0
rsomics-vcf-headPrint the VCF header and the first N records — Rust port of bcftools head92MIT OR Apache-2.0
rsomics-vcf-indel-statsPer-site indel length and VAF distribution statistics — DLEN/DVAF/DFRAC histograms and insertion/deletion/frameshift/inframe…20MIT OR Apache-2.0
rsomics-vcf-indexIndex a bgzipped VCF (.csi/.tbi) — Rust port of bcftools index37MIT OR Apache-2.0
rsomics-vcf-indv-statsPer-individual VCF statistics: TsTv-summary, singletons, depth (vcftools --TsTv-summary/--singletons/--depth)79MIT OR Apache-2.0
rsomics-vcf-isecVCF intersection — find shared variants between two VCFs (bcftools isec)74MIT OR Apache-2.0
rsomics-vcf-ld-pruneVCF-native LD pruning — maximal set of approximately unlinked variants by greedy r² windowing (scikit-allel locate_unlinked port)18MIT OR Apache-2.0
rsomics-vcf-mergeMerge multi-sample VCFs by position — bcftools merge equivalent62MIT OR Apache-2.0
rsomics-vcf-missing-statsPer-individual and per-site missingness statistics from a VCF (vcftools --missing-indv/--missing-site)57MIT OR Apache-2.0
rsomics-vcf-mpileupVCF-emitting pileup (genotype likelihoods) from BAM — Rust port of bcftools mpileup single-sample SNP mode58MIT OR Apache-2.0
rsomics-vcf-normLeft-align and normalize VCF indels — Rust port of bcftools norm81MIT OR Apache-2.0
rsomics-vcf-polysomyEstimate per-chromosome copy number from BAF distributions — Rust port of bcftools polysomy38MIT OR Apache-2.0
rsomics-vcf-popgenTwo-population and per-individual VCF population-genetics: Fst (Weir-Cockerham + Hudson), Dxy divergence, Lewontin D'/r2, and…90MIT OR Apache-2.0
rsomics-vcf-queryExtract fields from VCF records — Rust port of bcftools query163MIT OR Apache-2.0
rsomics-vcf-reheaderReplace a VCF header or rename samples — Rust port of bcftools reheader58MIT OR Apache-2.0
rsomics-vcf-renamersomics-vcf-rename — rsomics bioinformatics tool16MIT OR Apache-2.0
rsomics-vcf-rohRuns-of-homozygosity detector — Rust port of bcftools roh37MIT OR Apache-2.0
rsomics-vcf-sampleRandom subsample VCF variants by fraction or exact count — bcftools view subsample equivalent74MIT OR Apache-2.0
rsomics-vcf-setgtConditionally rewrite VCF genotypes — Rust port of bcftools +setGT70MIT OR Apache-2.0
rsomics-vcf-sfsSite frequency spectrum (SFS) of a VCF — 1D and 2D joint (two-population), unfolded (derived) and folded (minor), with neutral…37MIT OR Apache-2.0
rsomics-vcf-site-depthPer-site FORMAT/DP depth aggregation — reimplements vcftools --site-depth / --site-mean-depth59MIT OR Apache-2.0
rsomics-vcf-smpl-statsPer-sample VCF genotype statistics — passing/non-ref/hom/het/hemi counts, SNV/indel/singleton/missing tallies and per-sample…19MIT OR Apache-2.0
rsomics-vcf-snp-densityVCF variant density per fixed bp window — reimplements vcftools --SNPdensity75MIT OR Apache-2.0
rsomics-vcf-sortSort a VCF by chromosome and position — Rust port of bcftools sort85MIT OR Apache-2.0
rsomics-vcf-splitSplit VCF by chromosome into per-chromosome files39MIT OR Apache-2.0
rsomics-vcf-split-vepQuery and extract structured VEP/bcftools-csq CSQ/BCSQ annotations — Rust port of bcftools +split-vep32MIT OR Apache-2.0
rsomics-vcf-statsBasic VCF variant statistics — SNP/indel counts, Ti/Tv ratio39MIT OR Apache-2.0
rsomics-vcf-tajima-dTajima's D statistic in fixed-width windows from VCF — byte-identical to vcftools --TajimaD37MIT OR Apache-2.0
rsomics-vcf-to-bedConvert VCF variant positions to BED intervals55MIT OR Apache-2.0
rsomics-vcf-trio-statsPer-trio VCF transmission and de-novo statistics — valid/non-ref GTs, Mendelian errors, novel/untransmitted/transmitted…35MIT OR Apache-2.0
rsomics-vcf-tstv-stratTs/Tv stratified by ALT allele count or QUAL threshold — reimplements vcftools --TsTv-by-count / --TsTv-by-qual60MIT OR Apache-2.0
rsomics-vcf-utilsVCF utility toolkit — view, filter, count, stats, and convert operations54MIT OR Apache-2.0
rsomics-vcf-valfmtRe-render VCF INFO/FORMAT/QUAL values exactly as htslib prints them (integers via %d, Type=Float via f32 + htslib kputd %g) — the…75MIT OR Apache-2.0
rsomics-vcf-validateValidate VCF format integrity40MIT OR Apache-2.0
rsomics-vcf-variant-distanceAnnotate each VCF record with DIST=<distance to nearest variant on same chromosome> — reimplements bcftools +variant-distance39MIT OR Apache-2.0
rsomics-vcf-viewSubset and filter VCF records — Rust port of bcftools view55MIT OR Apache-2.0
rsomics-vcf-window-piNucleotide diversity (π) in fixed-width windows from VCF — byte-identical to vcftools --window-pi40MIT OR Apache-2.0
rsomics-vlrVariation log-ratio (VLR) proportionality metric for compositional data — scikit-bio skbio.stats.composition.vlr / pairwise_vlr…54MIT OR Apache-2.0
rsomics-voomvoom log2-CPM transform with mean-variance precision weights for RNA-seq count matrices — a Rust reimplementation of limma's voom70MIT OR Apache-2.0
rsomics-voom-quality-weightsvoom log2-CPM transform with combined mean-variance precision and sample-quality weights for variable-quality RNA-seq — a Rust…50MIT OR Apache-2.0
rsomics-voterankVoteRank influential-node ranking (Zhang et al. 2016) — value-exact port of networkx.voterank56MIT OR Apache-2.0
rsomics-wasserstein1-D Wasserstein (earth mover's) distance between two empirical distributions, optionally weighted —…19MIT OR Apache-2.0
rsomics-weighted-statsWeighted descriptive statistics and mean inference — value-exact to statsmodels DescrStatsW20MIT OR Apache-2.0
rsomics-wiener-filter1-D adaptive Wiener filter over a boxcar window (scipy.signal.wiener equivalent)18MIT OR Apache-2.0
rsomics-wiener-indexWiener index of an undirected graph — value-exact port of networkx.wiener_index62MIT OR Apache-2.0
rsomics-wig-to-bedConvert WIG/bedGraph signal tracks to BED intervals above a threshold37MIT OR Apache-2.0
rsomics-wilcoxon-signed-rankWilcoxon signed-rank test (paired, non-parametric; asymptotic + exact) — scipy.stats.wilcoxon equivalent, value-exact35MIT OR Apache-2.0
rsomics-windowed-ldWindowed linkage-disequilibrium scan from a VCF: per bp window, a percentile (default median) of pairwise Rogers-Huff r² among…20MIT OR Apache-2.0
rsomics-wl-hashWeisfeiler-Lehman graph hash & subgraph hashes — value-exact port of networkx.weisfeiler_lehman_graph_hash /…54MIT OR Apache-2.0
rsomics-zscoreZ-score standardization (zscore / zmap / geometric zscore) of a numeric column — value-exact to scipy.stats.zscore/zmap/gzscore39MIT OR Apache-2.0
rsonA Light weight fast JSON Library for Rust Lang2,788Apache-2.0
rson-cliCommand-line tools for RSON973MIT OR Apache-2.0
rson-coreCore parsing and value types for RSON1,762MIT OR Apache-2.0
rson-schemaSchema validation for RSON1,009MIT OR Apache-2.0
rson_rsRust Object Notation6,528MIT/Apache-2.0
rsonaMusic information retrieval and audio feature extraction in Rust16Apache-2.0
rsonpathBlazing fast JSONPath CLI tool powered by SIMD32,854MIT
rsonpath-libBlazing fast JSONPath query engine powered by SIMD. Core library of `rsonpath`.41,081MIT
rsonpath-syntaxA JSONPath parser.18,233MIT
rsonpath-syntax-proptestTest utilities for JSONPath.2,660MIT
rsonpath-test-codegenBlazing fast JSONPath query engine powered by SIMD. TOML-based test codegen for rsonpath-lib.1,709MIT
rsonschemaA fast, simple, user-friendly JSON Schema validator for Rust85Apache-2.0
rsopSOP CLI tool based on rPGP and rpgpie26,064CC0-1.0
rsop-octSOP CLI tool for OpenPGP card devices based on rPGP3,052MIT OR Apache-2.0
rsopenA multiplatform application launcher with fuzzy search capabilities.46MIT OR Apache-2.0
rsorReusable slice of references58,694MIT OR Apache-2.0
rsordA fast CLI password generator, based on a public wordlist, masterpassword and string907MIT OR Apache-2.0
rsortperform different sorting algorithms on lists of numbers1,596GPL-3.0-or-later
rsotpA Rust library for generating and verifying one-time passwords15,792MIT
rsoundcloudA SoundCloud API client4,107MIT
rsoundiolibsoundio bindings for Rust13,048MIT/Apache-2.0
rsoupA web page Getter and Parser1,802MIT
rsp-cliA Rust CLI tool that converts escaped strings embedded in YAML ConfigMaps into properly formatted multi-line strings.444MIT
rsp-rsA RDF Stream Processing engine in Rust, supporting RSP-QL queries with sliding windows and real-time analytics530MIT