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Science::Bioinformatics::Sequence analysis 51 crates

Data as of 2026-07-25 (crates.io database dump, timestamp 2026-07-25T02:00:36Z). Source: crates.io · db-dump.tar.gz · methodology & corrections.

libsais-sysRaw bindings to the C library libsais for suffix array construction106,694MIT OR Apache-2.0External FFI bindingsScience::Bioinformatics::Sequence analysis libsaisBindings to the C library libsais for suffix array construction105,253MIT OR Apache-2.0API bindingsScience::Bioinformatics::Sequence analysis fqkitfqkit: a simple and cross-platform program for fastq file manipulation62,831GPL-3.0Command line utilitiesScience::Bioinformatics::Sequence analysis rustymsA library to handle proteomic mass spectrometry data and match peptides to spectra.31,696MIT OR Apache-2.0Science::Bioinformatics::ProteomicsScience::Bioinformatics::Sequence analysis bio-seqBit packed and well-typed biological sequences26,305MITScience::BioinformaticsScience::Bioinformatics::Genomics na_seqDNA, RNA, and amino acid sequence types and functions20,436MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Proteomics bio_filesSave and load common biology file formats13,588MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Proteomics zoeA nightly library for viral genomics6,714Apache-2.0AlgorithmsScience::Bioinformatics::Genomics oxbowRead conventional genomic file formats as data frames and more via Apache Arrow.6,535MIT OR Apache-2.0Data structuresEncoding prseqRust tools (with Python bindings) for sequence analysis4,922MIT OR Apache-2.0Parsing toolsScience::Bioinformatics::Sequence analysis abpoa-rsRust bindings for abPOA: Adaptive Banded POA3,640MITScience::BioinformaticsScience::Bioinformatics::Genomics modern-areciboGenerate images of the Arecibo message with a user-provided population and genome size3,512MITAerospace::Space protocolsCommand line utilities microBioRustMicrobiology friendly bioinformatics Rust functions3,287MITData structuresScience termal-msaA viewer of multiple sequence alignments, with a text user interface3,089MITCommand line utilitiesScience::Bioinformatics abpoa-sysAutomatically generated FFI definitions for abPOA3,032MITScience::BioinformaticsScience::Bioinformatics::Genomics nthash-rsPure‑Rust port of ntHash2,296MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis nanalogueBAM/Mod BAM parsing and analysis tool with a single-molecule focus2,268MITCommand line utilitiesScience::Bioinformatics::Genomics genomersPackage to download NCBI genome data and metadata2,131MITCommand line utilitiesScience::Bioinformatics::Sequence analysis dnacombCount the occurances of structured sequence reads and compare to an expected library1,685MITCommand line utilitiesScience::Bioinformatics::Sequence analysis genedexA small and fast FM-Index implementation1,578MIT OR Apache-2.0AlgorithmsData structures virust-locatorA tool for generating sequence locators for HIV/SIV sequences, resembling the functionality of the LANL HIV-Locator tool.1,531MITCommand line utilitiesScience::Bioinformatics::Sequence analysis microBioRust-seqmetricsMicrobiology friendly bioinformatics Rust functions1,521MITData structuresScience microBioRust-heatmapMicrobiology friendly bioinformatics Rust functions1,379MITData structuresScience::Bioinformatics ff_structurefuzzyfold's secondary structure representations.1,147MITScienceScience::Bioinformatics ff_energyfuzzyfold's nearest neighbor free energy evaluations.1,046MITScienceScience::Bioinformatics microbiorust-pyPython bindings for microBioRust Microbiology friendly bioinformatics Rust functions894MITData structuresScience ff_kineticsfuzzyfold's stochastic secondary structure simulations.876MITScienceScience::Bioinformatics sais_drumAn implementation of the SAIS algorithm for suffix array construction797MIT OR Apache-2.0AlgorithmsData structures microBioRust-microSeqIOMicrobiology friendly bioinformatics Rust functions706MITData structuresScience fuzzyfoldNucleic acid secondary structure kinetics.688MITScienceScience::Bioinformatics mzcoreCore logic for handling massspectrometry in Rust.598MIT OR Apache-2.0Science::Bioinformatics::ProteomicsScience::Bioinformatics::Sequence analysis aa2nucalnConvert an amino acid alignment into a nucleotide alignment.569MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis digest-rsRust bindings for the digest library545MITAlgorithmsScience::Bioinformatics strobemers-rsRust implementation of strobemers505MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis kira-fastqHigh-performance FASTQ reader and writer with mmap-first design. Supports plain, gzip, and BGZF inputs/outputs; optional…296MITCommand line utilitiesScience kira-ls-alignerUnified short- and long-read sequence aligner written in Rust 2024. It combines minimap2-style minimizers and chaining with…192MITAlgorithmsCommand line utilities mzannotateHandle fragmentation of (complex) peptidoforms.186MIT OR Apache-2.0Science::Bioinformatics::ProteomicsScience::Bioinformatics::Sequence analysis imgtAccess the IMGT database from Rust176MIT OR Apache-2.0Science::Bioinformatics::Sequence analysis kira-bamHigh-performance BAM/SAM/CRAM toolkit written in Rust 2024. Drop-in samtools-compatible CLI…154MITAlgorithmsCommand line utilities fastdedupA fast and memory-efficient FASTX PCR deduplication tool110MITCommand line utilitiesScience msafaraView, edit, and explore multiple sequence alignments in your terminal86MITCommand line utilitiesScience::Bioinformatics kira-qcFastQC-compatible QC tool written in Rust56MITAlgorithmsCommand line utilities mzalignAlign peptidoforms while with mass-based alignment.55MIT OR Apache-2.0Science::Bioinformatics::ProteomicsScience::Bioinformatics::Sequence analysis pileup-hiCLI program to generate varying pileup-derived output formats for SAM and BAM51non-standardCommand line utilitiesScience::Bioinformatics kira-clusterDeterministic Rust CLI for MMseqs2-like approximate high-throughput sequence clustering/search workflows.50MITCommand line utilitiesScience pileuphi_libHigh-throughput, extensible SAM/BAM pileup generation library45non-standardCommand line utilitiesScience::Bioinformatics kira-protein-longevity-analysisCLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress,…42MITCommand line utilitiesScience kira-scgRust CLI for preprocessing single-cell RNA-seq count matrices.37MITAlgorithmsCommand line utilities markov_genomeLearn the properties of a FASTA sequence database and simulate sequences in a Markov process30BSD-3-ClauseScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis kira-molecular-event-log-processorHigh-performance Rust CLI to normalize molecular recorder outputs into the Cellular Event Log (CEL) format and build fast indices.18MITCommand line utilitiesScience cigar_collapserA program that collapses CIGAR strings from SAM/BAM files into shorter human-readable string14GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics::Genomics