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Science::Bioinformatics 225 crates

Data as of 2026-07-25 (crates.io database dump, timestamp 2026-07-25T02:00:36Z). Source: crates.io · db-dump.tar.gz · methodology & corrections.

ecgtoolkitECG Conversion Toolkit - read, write, and convert electrocardiogram files26Apache-2.0Science::Bioinformatics igv-rsInteractive terminal genome viewer for FASTA / VCF / BAM / GFF / BED / bigWig / BEDPE. Includes a bundled-igv.js browser…26MITCommand line utilitiesScience::Bioinformatics bismark-bedgraphRust port of Bismark Perl's bismark2bedGraph script24GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-coverage2cytosineRust port of Bismark Perl's coverage2cytosine script (Phase A: scaffold + CLI + genome reader)24GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics methylsieveFast per-template tagging and filtering of unconverted reads in bisulfite / EM-seq SAM/BAM files24MITCommand line utilitiesScience::Bioinformatics bijux-atlas-cliUser CLI entrypoint for Atlas dataset, query, validation, and export workflows22Apache-2.0Command line utilitiesScience::Bioinformatics electrocardiogram-synthetic-data-generatorElectrocardiogram synthetic data generator Rust crate. Work in progress. Do not use in production. AI-generated code. This is…22MIT OR Apache-2.0 OR BSD-3-Clause OR GPL-2.0-only OR GPL-3.0-onlyScience::BioinformaticsSimulation papasmurf-pyPyO3 bindings and Python interface to PAPASMURF, a Platform-Accelerated Package for Alignment-free SMURF analysis.22GPL-3.0-or-laterScience::Bioinformatics ozxA CLI for creating OZX archives from OME-Zarr data.22MITCommand line utilitiesEncoding bijux-atlas-serverRuntime server entrypoint for Atlas HTTP delivery and cache orchestration21Apache-2.0Science::BioinformaticsWeb programming::HTTP server bijux-atlas-opsOperational surface registry and stack-facing contracts for bijux-atlas21Apache-2.0Command line utilitiesScience::Bioinformatics bismark-summaryRust port of Bismark Perl's bismark2summary project-level multi-sample aggregator19GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-bam2nucRust port of Bismark Perl's bam2nuc script (mono-/di-nucleotide coverage QC)19GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-alignerRust port of the Bismark Perl aligner wrapper (bismark)19GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-nome-filteringRust port of Bismark Perl's standalone NOMe_filtering script (per-read NOMe-Seq classifier)19GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-methylation-consistencyRust port of Bismark Perl's methylation_consistency script — splits a Bismark BAM by read-level methylation consistency19GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-genome-preparationRust port of Bismark Perl's bismark_genome_preparation script19GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-reportRust port of Bismark Perl's bismark2report script (per-sample graphical HTML report)19GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics newickxA parser and minimal datastructure for unrooted phylogenetic trees in the Newick format.19MIT OR Apache-2.0Data structuresParser implementations chelaeA toolkit for trimming and filtering FASTQ reads.18MITCommand line utilitiesScience::Bioinformatics kira-molecular-event-log-processorHigh-performance Rust CLI to normalize molecular recorder outputs into the Cellular Event Log (CEL) format and build fast indices.18MITCommand line utilitiesScience rosalind-bioDeterministic, low-memory genomics engine: memory as a verifiable contract (declare → predict → honor → verify) for alignment and…17MIT OR Apache-2.0AlgorithmsScience::Bioinformatics bismark-filter-nonconversionRust port of Bismark Perl's filter_non_conversion script16GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics bismark-extractorRust port of Bismark Perl's bismark_methylation_extractor script (Phase G: bedGraph + cytosine_report subprocess chain)16GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics sam-formatterConvert SAM/BAM alignments into uniform tabular output (CSV, TSV, PSV, Parquet, custom), with optional tag columns and random…15MITCommand line utilitiesScience::Bioinformatics