Science 10,187 crates

unlab-gpuMicro scripting language for neural networks that uses unmtx-gpu.40MPL-2.0MathematicsScience rsomics-normaltestD'Agostino-Pearson normality battery (normaltest / skewtest / kurtosistest) — value-exact scipy.stats port40MIT OR Apache-2.0Command line utilitiesScience rsomics-linregressSimple ordinary-least-squares linear regression with the Student-t p-value and standard errors — value-exact…40MIT OR Apache-2.0Command line utilitiesScience ryftA Framework for Tracing, Automatic Differentiation, and Just-In-Time Compilation40MIT OR Apache-2.0CompilersHardware support cuda-energyATP budgets, circadian rhythm, apoptosis, epigenetic memory40MIT OR Apache-2.0Science rsomics-spearman-corrSpearman (and Pearson) rank correlation with the Student-t p-value — scipy.stats.spearmanr/pearsonr equivalent, value-exact40MIT OR Apache-2.0Command line utilitiesScience kizzasiAutoregressive General-Purpose Signal Predictor (AGSP) - Neuro-Symbolic Architecture for continuous signal streams40Apache-2.0AlgorithmsScience mnp-plasmonEfficient Rust library for calculating optical response of metallic nanoparticles using Drude model and Rayleigh approximation.…40GPL-3.0-onlyScience motif-bridgeCross-language toolkit for converting motifs between MEME and HOMER formats40MITCommand line utilitiesScience grit-genomicsGRIT: Genomic Range Interval Toolkit - high-performance genomic interval operations40MITCommand line utilitiesScience cealignImplementation of the Combinatorial Extension (cealign) algorithm to align protein structures400BSDCommand line utilitiesScience invrDeclarative data validation engine using invariants executed on Polars DataFrames.40Apache-2.0Data structuresDatabase interfaces dsfb-fusion-benchDeterministic synthetic benchmarking and plotting data generator for DSFB fusion diagnostics40Apache-2.0AlgorithmsCommand line utilities hashrope-bioComputational biology applications of hashrope — drug resistance panels, gene-level change detection, genomic region queries,…40MITAlgorithmsScience oxigeo-shapefileShapefile (ESRI) driver for OxiGeo - Pure Rust GDAL reimplementation40Apache-2.0EncodingParser implementations oxigeo-gpkgPure Rust GeoPackage (GPKG) reader for OxiGeo - SQLite format parser without C dependencies40Apache-2.0EncodingParser implementations oxigeo-pmtilesPure Rust PMTiles v3 reader for OxiGeo - single-file tile archive with varint directory40Apache-2.0EncodingParser implementations ortools-scipRust bindings for Google OR-Tools SCIP mixed-integer programming solver40Apache-2.0AlgorithmsMathematics memori-coreCore library for memori-rs — local-first semantic memory backed by LanceDB and fastembed40MITDatabase interfacesScience tensorenTraits for multidimensional arrays.40MITData structuresScience hoomd-mdPerform molecular dynamics simulations on systems of bodies in hoomd-rs.40BSD-3-ClauseScience rsomics-runstestWald-Wolfowitz runs test — statsmodels runstest_1samp/runstest_2samp equivalent, value-exact40MIT OR Apache-2.0Command line utilitiesScience rufield-provenanceRuField MFS provenance receipts: sha256 hashing + ed25519 sign/verify and the §11 fusability invariant40MITCryptographyScience rsomics-square-tableBowker's symmetry test and the Stuart-Maxwell / Bhapkar marginal-homogeneity tests on a k×k paired table — value-exact…40MIT OR Apache-2.0Command line utilitiesScience oxiephemeris-clioxieph: CLI for the OxiEphemeris Pure Rust ephemeris engine40Apache-2.0Command line utilitiesScience rsomics-medcoupleMedcouple robust skewness statistic (Brys-Hubert-Struyf)40MIT OR Apache-2.0Command line utilitiesScience rsomics-chordalGraph chordality test and chordal maximal-clique enumeration via maximum cardinality search — value-exact port of…40MIT OR Apache-2.0Command line utilitiesScience rsomics-methyldackelPer-CpG methylation extraction from bisulfite-aligned BAM — Rust port of MethylDackel extract40MIT OR Apache-2.0Science rsomics-rclrRobust centered log-ratio (rCLR) transform of a sparse composition table — zeros become NaN instead of needing a pseudocount —…40MIT OR Apache-2.0Command line utilitiesScience lamquant-historyShared history.json + resume-state reader/writer for LamQuant front-ends. Tracks recent files and operation logs.39AGPL-3.0-or-laterScience rsomics-bed-validateValidate BED file format: check field counts, coordinate ordering, and integer parsing39MIT OR Apache-2.0Command line utilitiesScience dada2-rsAn experimental Rust implementation of the DADA2 amplicon denoising algorithm39LGPL-3.0-onlyCommand line utilitiesScience rsomics-bed-reldistCompute relative distances between two BED interval sets — bedtools reldist equivalent39MIT OR Apache-2.0Command line utilitiesScience pathrex-sysNative FFI bindings for SuiteSparse:GraphBLAS and LAGraph used by the pathrex crate.39MITExternal FFI bindingsScience ogeniusLightweight AI inference server using HuggingFace models directly - a simpler alternative to Ollama39MITAlgorithmsAsynchronous boruta-rsFast parallel Boruta feature selection algorithm in Rust — OOB permutation importance, classification and regression39MITAlgorithmsScience tensor-forgeA minimal deterministic compute graph runtime for tensor operations in Rust.39MITAlgorithmsData structures rakka-accel-trainDistributed training blueprints on rakka-accel-cuda: DataParallelTrainer, PipelineParallelTrainer, TensorParallelTrainer,…39Apache-2.0AsynchronousConcurrency mcp-medicalClinical reference and global health intelligence MCP server — PubMed, WHO GHO, health statistics, medical literature39Apache-2.0API bindingsScience mcp-pharmacyGlobal drug reference and regulatory intelligence MCP server — OpenFDA, DailyMed, RxNorm, PubChem, Health Canada, EMA,…39Apache-2.0API bindingsScience motifscanA fast, streaming, low-memory CLI and Rust library for exact DNA motif scanning in FASTA and FASTQ files.39MITCommand line utilitiesScience wgpu-algorithmsHigh-performance, safe wgpu Radix Sort and Prefix Scan for Rust.39MITAlgorithmsGraphics lance-index-coreCore traits and types for Lance index plugins39Apache-2.0Data structuresDatabase implementations rsomics-vcf-variant-distanceAnnotate each VCF record with DIST=<distance to nearest variant on same chromosome> — reimplements bcftools +variant-distance39MIT OR Apache-2.0Command line utilitiesScience qalculate-rsSafe Rust bindings for Qalculate library39GPL-2.0-onlyAPI bindingsScience emergent-timeCalculus of emergent / relational time: Wheeler-DeWitt timeless constraint, Page-Wootters relational clocks, entropic time,…39MITAlgorithmsScience balroxPure-Rust learned bacterial gene/ORF quality scorer: a dilated temporal CNN (architecture inspired by Balrog) with…39MIT OR Apache-2.0Command line utilitiesScience alphastellRust CAD generator for stellarator fusion reactors: VMEC equilibria to STEP geometry for in-vessel layers and modular coils.39MITCommand line utilitiesMathematics rexisRexis - Agentic AI Framework for Rust with memory-first agents, RAG, and graph orchestration39MITAPI bindingsScience generic_constantsTraits providing type-generic numeric constants (Zero, One, ..., OneHundredTwentySeven) implemented across common integer and…39MIT OR Apache-2.0Data structuresNo standard library rsomics-zscoreZ-score standardization (zscore / zmap / geometric zscore) of a numeric column — value-exact to scipy.stats.zscore/zmap/gzscore39MIT OR Apache-2.0Command line utilitiesScience genesis-multiversePublic crate namespace for the Genesis Protocol simulation ecosystem. Canonical metadata, experiment totals, and repository…39MITScienceSimulation antecedent-identifyCausal identification for the Antecedent engine: backdoor, front-door, IV, ID/IDC, and temporal strategies; start with the…39MIT OR Apache-2.0MathematicsScience antecedent-estimateFrequentist and Bayesian estimators for identified causal effects in the Antecedent engine; start with the `antecedent` crate39MIT OR Apache-2.0MathematicsScience dec64-rsDEC64 decimal floating point with 16 digits of precision39MITMathematicsScience qte-technologies-catalogOfficial high-performance Rust client to access the industrial and scientific laboratory equipment catalog dataset by QTE…39MITAPI bindingsScience ruvector-verified-wasmWASM bindings for ruvector-verified: proof-carrying vector operations in the browser39MIT OR Apache-2.0MathematicsScience rsomics-flignerFligner-Killeen test for equal variances (rank-based, median/mean/trimmed centering) with the chi-squared p-value —…39MIT OR Apache-2.0Command line utilitiesScience evidential-protocolMatsés + Kusunda inspired epistemic metadata for AI agent systems. Every claim declares how it knows.39MITData structuresScience daoql-eduDaoQL 教学版 — 多模态数据引擎教育项目39Apache-2.0Database implementationsScience kira-protein-prunerHigh-performance protein analysis tools39MITCommand line utilitiesScience oxigeo-copcPure Rust COPC (Cloud Optimized Point Cloud) reader for OxiGeo - LAS/LAZ format with spatial index39Apache-2.0EncodingParser implementations oxigeoPure Rust geospatial data abstraction library — the Rust alternative to GDAL39Apache-2.0EncodingParser implementations ciri-toolkitHigh-performance circRNA detection and isoform reconstruction toolkit39GPL-2.0-or-laterCommand line utilitiesScience rufield-privacyRuField MFS privacy policy + PrivacyGuard: P0..P5 classes, default policy, consent and identity gating (ADR-260 §10)39MITScience yatrosci-elementsPeriodic table with all 118 elements and comprehensive properties39AGPL-3.0-or-laterData structuresScience rsomics-grey-morphologyGrayscale morphological erosion/dilation/opening/closing with flat rectangular footprint — value-exact port of scikit-image gray…39MIT OR Apache-2.0Command line utilitiesScience openkspace-reconK-space -> image reconstruction: IFFT, coil combination, corrections.39Apache-2.0AlgorithmsScience oxiephemeris-analyticOxiEphemeris: Pure Rust ephemeris engine (analytic fallback: truncated VSOP87E planets + ELP2000-82B Moon, no data files)39Apache-2.0No standard libraryScience onnx-genaiRust inference runtime for generative AI models on ONNX Runtime39MITScienceText processing infinite_db_stepImport STEP (ISO 10303-21) CAD files into InfiniteDB spatial records39MITDatabase implementationsScience rsomics-fastq-splitSplit a FASTQ into N files or by line count. Rust port of fastp's split (deterministic --split_by_lines is byte-equal to fastp…39MIT OR Apache-2.0Command line utilitiesScience rz3Deterministic, exact-rational SMT solver in pure Rust (DPLL(T)/CDCL) with an exact linear-arithmetic core. Zero C dependencies,…39MIT OR Apache-2.0AlgorithmsMathematics rufield-fusionRuField MFS fusion graph + engine: TOML rules, weighted-Bayes / temporal-window inference, confidence decay (ADR-260 §12/§13/§24)39MITScience entropy-conservationConservation of Verification Entropy — a mathematical framework for the meta-law discovered across PLATO/SuperInstance experiments39MITDevelopment tools::TestingMathematics arc-eagerArc-eager transition-based dependency parser using the MaltParser feature template39MITScienceText processing ferrite-inferenceCPU-native GGUF inference kernels and runtime for Ferrite39Apache-2.0AlgorithmsHardware support dualcssDual-CSS HF Mode — amateur-radio chirp-spread-spectrum HF modem with GUI, waterfall, FEC and PTT39MITMultimedia::AudioScience chrony-rs-ioReal OS I/O layer for chrony-rs (a faithful port of chrony's socket.c syscall layer).39GPL-2.0-onlyNetwork programmingScience katgpt-sleepSleep-Time Query Anticipator — offline query anticipation substrate (arXiv:2504.13171 Lin et al.). SleepTimeAnticipator…39MITAlgorithmsScience mchep_pyapiHighly parallelizable Monte Carlo integration routine with SIMD and GPU acceleration39GPL-3.0-or-laterAlgorithmsScience rsomics-regionpropsRegion shape descriptors from 2D label images — closed-form port of skimage.measure.regionprops39MIT OR Apache-2.0Command line utilitiesScience rsomics-core-numberK-core decomposition: compute the core number of every node in an undirected graph39MIT OR Apache-2.0Command line utilitiesScience rsomics-fastq-complexityFASTQ low-complexity filter — discard reads whose per-base change fraction falls below a threshold38MIT OR Apache-2.0Command line utilitiesScience gsva-rustPure-Rust port of the GSVA family of gene-set enrichment methods (GSVA, ssGSEA, z-score, PLAGE), validated for numeric parity…38Artistic-2.0Science kipPure thread-safe engineering expression evaluator for US imperial units38MIT OR Apache-2.0MathematicsScience nabled-embeddingsLightweight ndarray-native compute and rerank layer for embedding vectors38MIT OR Apache-2.0AlgorithmsMathematics rsomics-bed-fisherFisher's exact test for overlap significance between two BED interval sets — bedtools fisher equivalent38MIT OR Apache-2.0Command line utilitiesScience rotastellar-distributedDistributed compute coordination for Earth-space AI workloads38MITConcurrencyScience mcp-weatherGlobal weather intelligence MCP server — forecasts, historical data, air quality, marine conditions via Open-Meteo (free, no API…38Apache-2.0API bindingsScience rsomics-cramervonmisesCramér-von Mises goodness-of-fit tests (one-sample + two-sample) — scipy.stats.cramervonmises / cramervonmises_2samp equivalent,…38MIT OR Apache-2.0Command line utilitiesScience concision-snnSynaptic Neural Networks for the Concision Machine Learning Framework38Apache-2.0AlgorithmsMathematics oxidizrA Rust-based LLM training framework built on Candle38MITCommand line utilitiesScience tileuniverse-quantumStructured sparse GHZ/W-state representations with symbolic qubit-count labels38MITScienceSimulation rsomics-pdb-geometryGlobal geometric descriptors of a protein structure (center of mass, radius of gyration, bounding box, mass) from a PDB38MIT OR Apache-2.0Command line utilitiesScience tflite-c-rsSafe Rust wrapper for the TensorFlow Lite C API via runtime dynamic loading (libloading) — no build-time TFLite link required.38MIT OR Apache-2.0API bindingsExternal FFI bindings elicit_uomElicitation-enabled uom shadow crate — MCP tools for units-of-measurement38Apache-2.0 OR MITMathematicsScience rsomics-dominanceGraph dominance analysis — immediate dominators + dominance frontiers of a directed graph. Value-exact port of…38MIT OR Apache-2.0Command line utilitiesScience moenarch-video-analysis-datasetSerializable retained analysis records for video-analysis.38MIT OR Apache-2.0AlgorithmsComputer vision moenarch-video-analysis-radiance-ioCOLMAP, Nerfstudio, and PLY I/O for video-analysis radiance workflows.38MIT OR Apache-2.0AlgorithmsComputer vision libphoneticsDatatypes for phones; sound change algorithms.38AGPL-3.0-onlyScienceText processing penrose-memoryAperiodic memory palace for AI agents with tile lifecycle, simulation-first predictions, and Lamport clocks.38MITData structuresScience omicsxomicsx: SIMD-accelerated sequence alignment and bioinformatics analysis for petabyte-scale genomic data38Apache-2.0 OR MITAlgorithmsData structures oxigeo-flatgeobufFlatGeobuf driver for OxiGeo - Pure Rust GDAL reimplementation38Apache-2.0EncodingParser implementations kira-irreversibilityDeterministic irreversibility scoring for time-series state trajectories.38MITAlgorithmsCommand line utilities voxelazVoxelize LAS/LAZ point clouds into downsampled voxel centers38MIT OR Apache-2.0Command line utilitiesScience microscope-memoryPure binary cognitive memory engine. Zero-JSON, mmap-based, hierarchical memory architecture.38MITAlgorithmsData structures rsomics-gaussian-filterValue-exact Gaussian blur — port of skimage.filters.gaussian / scipy.ndimage.gaussian_filter38MIT OR Apache-2.0Command line utilitiesScience lshdedup-corePure-Rust core for lshdedup: MinHash + LSH near-duplicate detection.38MIT OR Apache-2.0AlgorithmsScience numshooterHigh-performance mathematical library written in Rust38MITMathematicsScience rsomics-biconnectivityBiconnectivity family (bridges, articulation points, biconnected components) — value-exact port of…38MIT OR Apache-2.0Command line utilitiesScience ferrite-fixturesIn-memory GGUF fixtures for Ferrite tests38Apache-2.0Development tools::TestingScience rsomics-directed-componentsStrongly- and weakly-connected components of directed graphs — value-exact networkx equivalent (Tarjan SCC + BFS WCC)38MIT OR Apache-2.0Command line utilitiesScience rsomics-load-centralityLoad centrality (Newman betweenness) for undirected graphs — port of networkx.load_centrality38MIT OR Apache-2.0Command line utilitiesScience mchep_capiC language interface to MCHEP38GPL-3.0-or-laterAlgorithmsScience scies-math-thA high-performance, dependency-free mathematical toolkit for Rust. Includes generic matrices, Quaternions, MCMC, ODE/PDE solvers,…38MITAlgorithmsMathematics pictor-runtimeInference runtime, sampling, tokenizer, and server for Pictor38Apache-2.0AlgorithmsScience ferric-loadFerric weight loading — a pure-Rust safetensors reader (F32/F16/BF16/F64 → f32). How real Llama/SmolVLA checkpoints enter the…38Apache-2.0Science rsomics-kinshipKING-robust kinship coefficients between sample pairs from a PLINK1 fileset (plink2 --make-king-table)38MIT OR Apache-2.0Science leopard_vecA high-performance parallelized vector container with deferred execution for bulk parallel operations37Apache-2.0ConcurrencyData structures rsomics-bed-total-bpCount total base-pairs covered by BED intervals (sum of end - start)37MIT OR Apache-2.0Command line utilitiesScience rusted_graphsGraph DB supporting dynamic nodes and edges, written in Rust37CC-BY-SA-4.0Data structuresDatabase interfaces rsomics-bed-uniqueRemove duplicate BED intervals (same chrom, start, end)37MIT OR Apache-2.0Command line utilitiesScience sci_task_mgrA Universal Scientific Calculation Task Manager37MITScience tensors-rsCompact NumPy-like dense tensor primitives for safe numerical Rust.37MITData structuresMathematics anofox-ml-textText feature extraction (CountVectorizer, TfidfVectorizer, HashingVectorizer) for anofox-ml37MIT OR Apache-2.0ScienceText processing anofox-ml-ioCSV data loading with ndarray integration for the anofox-ml machine learning library37MIT OR Apache-2.0AlgorithmsScience ferrum-ufuncUniversal functions and SIMD-accelerated elementwise operations for ferrum37MIT OR Apache-2.0MathematicsScience uxxCombinadic indexing for unsigned integers that have a fixed number of set bits.37MITAlgorithmsGame development pathwise-geoRiemannian manifold SDE simulation (geodesic Euler/Milstein/SRI) on S^n, SO(n), SPD(n) via the cartan geometry library37MITMathematicsScience rsomics-peak-annotateAnnotate ChIP/ATAC peaks with nearest gene, TSS distance, and genomic-feature category — Rust port of Bioconductor ChIPseeker…37MIT OR Apache-2.0Command line utilitiesScience oxiphysics-pythonPython bindings for the OxiPhysics engine37Apache-2.0ScienceSimulation anofox-ml-neural-networksMulti-layer perceptron neural networks for the anofox-ml library37MIT OR Apache-2.0AlgorithmsScience anofox-ml-neighborsK-nearest neighbors classifiers and regressors with KD-tree for the anofox-ml library37MIT OR Apache-2.0AlgorithmsScience mel-spec-pngGenerate mel spectrogram PNG images from raw audio samples. Pure Rust, no external binaries.37MIT OR Apache-2.0Multimedia::AudioScience anofox-ml-gaussian-processGaussian Process regression + classification (Laplace) for the anofox-ml library37MIT OR Apache-2.0AlgorithmsScience krysysKrylov subspace solvers for symmetric systems of linear equations37MIT OR Apache-2.0AlgorithmsMathematics obelyzkobelyzk.rs — Verifiable AI engine built on STWO Circle STARKs. Provable inference for every model.37Apache-2.0CryptographyScience sat-solversUnified interface to multiple SAT solvers (CaDiCaL, MiniSat, Glucose, Lingeling, Kissat) with automatic source compilation37MITAlgorithmsScience anofox-ml-preprocessingFeature preprocessing, scaling, and PCA for the anofox-ml machine learning library37MIT OR Apache-2.0AlgorithmsScience rsomics-linkage-statsLinkage matrix inspection: maxdists, maxinconsts, is-monotonic, leaders, is-valid-linkage37MIT OR Apache-2.0Command line utilitiesScience rus-torchA comprehensive deep learning framework in Rust, merging core, nn, vision, text, and wasm37MIT OR Apache-2.0Computer visionScience rsomics-ebayes-corelimma-faithful empirical-Bayes moment estimation: fitFDist scaled-F prior estimator with digamma/trigamma/trigamma-inverse.37MIT OR Apache-2.0Science stateset-rl-coreHigh-performance Rust core for reinforcement learning - GAE, advantage computation, reward normalization with optional Python…37BUSL-1.1AlgorithmsMathematics rsomics-node-redundancyBipartite node redundancy coefficient (Latapy-Magnien-Del Vecchio), a value-exact Rust port of networkx.bipartite.node_redundancy37MIT OR Apache-2.0Command line utilitiesScience recall-graphKnowledge graph with semantic search for AI memory systems37AGPL-3.0-onlyDatabase interfacesScience pcb-toolkitPCB design calculator library — impedance, current capacity, via properties, and more37MIT OR Apache-2.0MathematicsScience charcoalDeclarative, DataFrame-native chart library for Polars. No browser required.37MIT OR Apache-2.0ScienceVisualization trueno-solveDense linear algebra solvers — LU, QR, SVD, Cholesky with provable contracts37MIT OR Apache-2.0AlgorithmsMathematics rsomics-trimmed-statsTrimmed sample statistics (tmean, tvar, tstd, tsem, trim_mean) — value-exact to scipy.stats37MIT OR Apache-2.0Command line utilitiesScience rsomics-jarque-beraJarque-Bera normality test — scipy.stats.jarque_bera equivalent, value-exact37MIT OR Apache-2.0Command line utilitiesScience rsomics-dispersionBackstrom–Kleinberg dispersion (all-pairs) — value-exact Rust port of networkx nx.dispersion37MIT OR Apache-2.0Command line utilitiesScience ndfunctionspaceFinite element function spaces.37BSD-3-ClauseMathematicsScience ferrox-solverIron-forged OR-Tools and HiGHS solvers as Converge Suggestors37MITAlgorithmsScience nexcore-downloads-scannerDownloads Intelligence Scanner - classifies files by NexVigilant Core relevance37MIT OR Apache-2.0Science attnresAttention Residuals (MoonshotAI/Kimi) implementation in Rust using burn37MITAlgorithmsScience devadaptBurn-powered developer adaptation model for skill and workflow recommendation37MITAlgorithmsScience dsfb-semiconductorDeterministic DSFB semiconductor benchmark companion for SECOM and PHM-style dataset adapters37Apache-2.0Command line utilitiesScience rlx-tiny-ttsTinyTTS English text-to-speech (VITS2/MeloTTS, 44.1 kHz) for RLX — all backends37GPL-3.0-onlyAlgorithmsScience figshare-rsRust client for Figshare article workflows, public article lookup, and file uploads/downloads.37MITAPI bindingsScience rsomics-entropyShannon entropy and Kullback-Leibler divergence of a discrete distribution — value-exact to scipy.stats.entropy37MIT OR Apache-2.0Command line utilitiesScience rsomics-circmeanCircular mean / variance / standard deviation of angle observations — scipy.stats.circmean/circvar/circstd equivalent, value-exact37MIT OR Apache-2.0Command line utilitiesScience sgemm-biDeterministic, batch-invariant CUDA GEMM engine with a full training triad (forward, dW, dX) in f32 / bf16 / f16, plus an opt-in…37MIT OR Apache-2.0MathematicsScience dino-seqLow-allocation FASTQ and FASTA parser core37MIT OR Apache-2.0Parser implementationsScience oxigeo-netcdfNetCDF driver for OxiGeo - Pure Rust NetCDF-3 with optional NetCDF-4 support37Apache-2.0EncodingParser implementations oxigeo-mobileMobile FFI bindings for OxiGeo - iOS and Android support for Pure Rust geospatial library37Apache-2.0API bindingsExternal FFI bindings smp-zk-proofsZK proof primitives for verifiable location and ML-training claims. Stable Ed25519-transcript backend ships by default; Groth16…37MITCryptographyScience kira-scgRust CLI for preprocessing single-cell RNA-seq count matrices.37MITAlgorithmsCommand line utilities oxiephemeris-compatOxiEphemeris: Swiss-Ephemeris-compatible calculation surface (SE-compatible API shape, clean-room implementation)37Apache-2.0No standard libraryScience rsomics-quantile-transformQuantile transformer — value-exact scikit-learn QuantileTransformer port mapping features to uniform or normal distributions37MIT OR Apache-2.0Command line utilitiesScience gta-coreA tool to analyze and manipulate the Graphic Transcript Assembly (GTA) format37Apache-2.0Data structuresScience rsomics-mcnemarMcNemar's test (2×2 paired) and Cochran's Q (k-sample paired binary) — value-exact statsmodels equivalent37MIT OR Apache-2.0Command line utilitiesScience hirnA cognitive memory database engine for LLM systems — the brain an LLM never had37Apache-2.0Database interfacesScience rsomics-closeness-vitalityCloseness vitality of nodes in an undirected, unweighted graph — value-exact networkx 3.6.1 equivalent37MIT OR Apache-2.0Command line utilitiesScience holographic-memoryA high-performance Holographic Memory System (HMS) implementing Vector Symbolic Architectures (VSA).37Apache-2.0AlgorithmsData structures rsomics-cliquesMaximal-clique family (find_cliques, node_clique_number, number_of_cliques, clique number) — value-exact port of…37MIT OR Apache-2.0Command line utilitiesScience ternary-entropyEntropy analysis for ternary strategy distributions37MITAlgorithmsMathematics holomapDeterministic UMAP — the bulk, on the boundary. Same input, same params, same seed: bit-identical embeddings.37MIT OR Apache-2.0AlgorithmsMathematics rsomics-dagDAG layer/depth analysis — value-exact port of networkx.topological_generations and dag_longest_path_length37MIT OR Apache-2.0Command line utilitiesScience rsomics-silhouetteSilhouette clustering-quality coefficient (silhouette_score + silhouette_samples) — value-exact scikit-learn equivalent37MIT OR Apache-2.0Command line utilitiesScience rsomics-pcoa-biplotProject descriptor/feature vectors onto a PCoA ordination — scikit-bio skbio.stats.ordination.pcoa_biplot equivalent (Legendre &…37MIT OR Apache-2.0Command line utilitiesScience rsomics-ilr-basisCustom-basis isometric log-ratio (ILR) transform: build an orthonormal balance basis from a sequential binary partition (SBP) or…37MIT OR Apache-2.0Command line utilitiesScience rsomics-square-clusteringSquare clustering coefficient (C4) for undirected graphs — exact port of networkx.square_clustering37MIT OR Apache-2.0Command line utilitiesScience rsomics-triadic-censusDirected triad census (Batagelj-Mrvar 16-type) — value-exact port of networkx.triadic_census37MIT OR Apache-2.0Command line utilitiesScience rsomics-seq-distPairwise nucleotide-sequence distances (Hamming, JC69, K2P) from an aligned FASTA — value-exact to scikit-bio, emits a…37MIT OR Apache-2.0Command line utilitiesScience copernicus_viewerGUI viewer and library for inspecting and comparing EOPF Zarr products from the Copernicus ecosystem37MIT OR Apache-2.0GUIScience wbspatialstatsUnified spatial statistics library: kriging, spatial autocorrelation, spatial regression, point process analysis37MIT OR Apache-2.0AlgorithmsRust patterns rvf-federationFederated RVF transfer learning -- PII stripping, differential privacy, federated averaging36MIT OR Apache-2.0CryptographyScience tensorlogic-oxicuda-backendOxiCUDA-powered GPU tensor execution backend for TensorLogic (Pure Rust CUDA via OxiCUDA)36Apache-2.0AlgorithmsMathematics readcon-dbMmap-backed CON frame corpus (Heed/LMDB), xxHash exact match, multi-language FFI36MITAPI bindingsDatabase interfaces miplogParse MIP/LP solver log files (Gurobi, Xpress, SCIP, HiGHS, COPT, …) into a unified, serde-serializable schema.36MIT OR Apache-2.0Parser implementationsScience rsomics-bbdukK-mer-based contaminant removal + adapter/quality trimming for FASTQ — independent clean-room Rust reimplementation of BBDuk…36MIT OR Apache-2.0Command line utilitiesScience anofox-ml-linearStochastic Gradient Descent linear models (SGDClassifier, SGDRegressor, PassiveAggressive) for anofox-ml36MIT OR Apache-2.0AlgorithmsScience math-statisticsShared multivariate statistics for dense matrix inputs and streaming observations.36MIT OR Apache-2.0AlgorithmsComputer vision biodexTerminal-native species atlas with cached images, range maps, and taxonomy browsing36MITCommand line utilitiesScience mimic-iv-clinical-database-demo-rust-crateMIMIC-IV: The Medical Information Mart for Intensive Care (MIMIC-IV) dataset contains data for over 200,000 patients admitted to…36MIT OR Apache-2.0 OR GPL-2.0 OR GPL-3.0 OR BSD-3-ClauseAPI bindingsData structures rlx-snacSNAC multi-scale neural audio codec (hubertsiuzdak/snac) for RLX — multi-backend36GPL-3.0-onlyAlgorithmsScience anofox-ml-naive-bayesGaussian / Multinomial / Bernoulli Naive Bayes classifiers for the anofox-ml library36MIT OR Apache-2.0AlgorithmsScience anofox-ml-discriminantLinear and Quadratic Discriminant Analysis for the anofox-ml library36MIT OR Apache-2.0AlgorithmsScience rsomics-bed12tobed6Split BED12 features into discrete BED6 intervals — bedtools bed12tobed6 equivalent36MIT OR Apache-2.0Command line utilitiesScience