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Science::Bioinformatics::Genomics 57 crates

Data as of 2026-07-25 (crates.io database dump, timestamp 2026-07-25T02:00:36Z). Source: crates.io · db-dump.tar.gz · methodology & corrections.

bio-seqBit packed and well-typed biological sequences26,305MITScience::BioinformaticsScience::Bioinformatics::Genomics na_seqDNA, RNA, and amino acid sequence types and functions20,436MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Proteomics efficient_pcaPrincipal component computation using SVD and covariance matrix trick17,607MITAlgorithmsMathematics bio_filesSave and load common biology file formats13,588MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Proteomics gtarsPerformance critical tools for genomic interval analysis.8,933MITScience::BioinformaticsScience::Bioinformatics::Genomics zoeA nightly library for viral genomics6,714Apache-2.0AlgorithmsScience::Bioinformatics::Genomics oxbowRead conventional genomic file formats as data frames and more via Apache Arrow.6,535MIT OR Apache-2.0Data structuresEncoding abpoa-rsRust bindings for abPOA: Adaptive Banded POA3,640MITScience::BioinformaticsScience::Bioinformatics::Genomics microBioRustMicrobiology friendly bioinformatics Rust functions3,287MITData structuresScience abpoa-sysAutomatically generated FFI definitions for abPOA3,032MITScience::BioinformaticsScience::Bioinformatics::Genomics nthash-rsPure‑Rust port of ntHash2,296MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis nanalogueBAM/Mod BAM parsing and analysis tool with a single-molecule focus2,268MITCommand line utilitiesScience::Bioinformatics::Genomics microBioRust-seqmetricsMicrobiology friendly bioinformatics Rust functions1,521MITData structuresScience microBioRust-heatmapMicrobiology friendly bioinformatics Rust functions1,379MITData structuresScience::Bioinformatics thafExtracts transcript sequences and gene maps from genome FASTA files using GFF3 annotations.1,319BSD-3-ClauseCommand line utilitiesScience forgersVCF manipulation based on FORGe ranking1,279MITCommand line utilitiesScience::Bioinformatics::Genomics nucsLibrary for working with nucleotide and amino acid sequences1,237MIT OR Apache-2.0Science::Bioinformatics::Genomics ff_structurefuzzyfold's secondary structure representations.1,147MITScienceScience::Bioinformatics ff_energyfuzzyfold's nearest neighbor free energy evaluations.1,046MITScienceScience::Bioinformatics microbiorust-pyPython bindings for microBioRust Microbiology friendly bioinformatics Rust functions894MITData structuresScience ff_kineticsfuzzyfold's stochastic secondary structure simulations.876MITScienceScience::Bioinformatics rustbamRust-powered BAM depth extraction with Python bindings845MITCommand line utilitiesScience::Bioinformatics::Genomics gtars-cliPerformance critical tools for genomic interval analysis. This is the CLI765MITScience::BioinformaticsScience::Bioinformatics::Genomics microBioRust-microSeqIOMicrobiology friendly bioinformatics Rust functions706MITData structuresScience fuzzyfoldNucleic acid secondary structure kinetics.688MITScienceScience::Bioinformatics genomic_pcaA CLI tool for performing PCA on genomic data from VCF files.602MITAlgorithmsMathematics aa2nucalnConvert an amino acid alignment into a nucleotide alignment.569MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis digest-rsRust bindings for the digest library545MITAlgorithmsScience::Bioinformatics strobemers-rsRust implementation of strobemers505MITScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis fastatsCLI to generate FASTA file statistics (masking, GC content, etc.).404Apache-2.0Command line utilitiesScience::Bioinformatics::Genomics kira-spatial-3dDeterministic 3D mesh, contour, and export primitives for spatial omics fields.227MITGraphicsScience kira-spatial-fieldGene-field extraction and deterministic signal transforms for spatial transcriptomics.142MITScienceScience::Bioinformatics kira-spatial-ioDeterministic spatial transcriptomics IO primitives for Kira.130MITScienceScience::Bioinformatics kira-spatial-coreDeterministic spatial math and contour primitives for transcriptomics 3D pipelines.126MITScienceScience::Bioinformatics fastqrab-dnaLow-level DNA primitives for fastqrab: sequence/quality handling, segments, and approximate matching120MITCommand line utilitiesScience::Bioinformatics fastdedupA fast and memory-efficient FASTX PCR deduplication tool110MITCommand line utilitiesScience fastqrab-configConfiguration data model for fastqrab: file formats, compression, and read segments107MITCommand line utilitiesScience::Bioinformatics mbf-fastq-processorThe fast, reliable multitool of FASTQ processing88MITCommand line utilitiesScience::Bioinformatics fastqrab-ioFASTQ/FASTA/BAM input and output with gzip/zstd compression for fastqrab85MITCommand line utilitiesScience::Bioinformatics kira-riboqcDeterministic ribosome and translation-state quality control for single-cell RNA-seq.79MITCommand line utilitiesScience kira-microenvironmentDeterministic, explainable ligand-receptor microenvironment interaction scoring for single-cell expression data.76MITCommand line utilitiesScience kira-biodata-managerReproducible bio-data manager with a project-local store and a shared global cache. kira-bm it's like npm/cargo/pip for…76MITCommand line utilitiesScience fastqrab-stepsPipeline building blocks for fastqrab: read transformations, filters, reports, and demultiplexing62MITCommand line utilitiesScience::Bioinformatics kira-spatialDeterministic orchestrator for spatial transcriptomics: IO, field transforms, core math, and 3D export.59MITCommand line utilitiesScience kira-autolysDeterministic, explainable autophagy/lysosome dependency QC for single-cell expression data.57MITCommand line utilitiesScience kira-secretionDeterministic, explainable secretion-state QC for single-cell expression data.56MITCommand line utilitiesScience pileup-hiCLI program to generate varying pileup-derived output formats for SAM and BAM51non-standardCommand line utilitiesScience::Bioinformatics rustyomestatsFast genome statistics: length, GC, N/L, 6-frame and FragGeneScan codon density, plus Castro U50 assembly metrics.48CC-BY-NC-4.0Command line utilitiesScience::Bioinformatics::Genomics pileuphi_libHigh-throughput, extensible SAM/BAM pileup generation library45non-standardCommand line utilitiesScience::Bioinformatics kira-spatial-3d-viewerInteractive GPU viewer for spatial 3D meshes, contours, and vector fields.42MITScienceScience::Bioinformatics kira-spatial-3d-cliCommand-line interface for deterministic spatial 3D mesh and contour export.42MITCommand line utilitiesScience fastqrabThe fast, reliable multitool of FASTQ processing36MITCommand line utilitiesScience::Bioinformatics rrblup-rsRust implementation of R/rrBLUP package for mixed model analysis34GPL-3.0-or-laterScience::Bioinformatics::Genomics rubamPure-Rust BAM/VCF/BCF depth, pileup, variants and stats with Python bindings — Windows / Linux / macOS native. CRAM is…34MITCommand line utilitiesScience::Bioinformatics::Genomics markov_genomeLearn the properties of a FASTA sequence database and simulate sequences in a Markov process30BSD-3-ClauseScience::Bioinformatics::GenomicsScience::Bioinformatics::Sequence analysis kira-molecular-event-log-processorHigh-performance Rust CLI to normalize molecular recorder outputs into the Cellular Event Log (CEL) format and build fast indices.18MITCommand line utilitiesScience cigar_collapserA program that collapses CIGAR strings from SAM/BAM files into shorter human-readable string14GPL-3.0-onlyCommand line utilitiesScience::Bioinformatics::Genomics